FastQCFastQC Report
Thu 9 May 2024
EGAF00007884115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007884115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3080599
Total Bases311.1 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT81290.2638772524434371No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC38150.12383955198323443No Hit
CATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGC33230.10786863204201522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)