FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510171325
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG45704480.8958653252414764TruSeq Adapter, Index 7 (97% over 37bp)
CTGCACATTGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20667600.40511096933956453No Hit
CTGCACATTGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11327770.22203854754086777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)