FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498979796
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTAAGAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT14828520.29717676184227704No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG11393190.22832968571737522TruSeq Adapter, Index 1 (97% over 35bp)
GGCTTAAGAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8898900.17834189021953906No Hit
GGCTTAAGAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5396350.1081476653615851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)