FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498927969
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTTATAACCATCTCGTATG20690810.414705353990688TruSeq Adapter, Index 3 (97% over 35bp)
TGGTTGTGGCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18722690.37525837722679367No Hit
TGGTTGTGGCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8254040.16543550397752907No Hit
TGGTTGTGGCCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5786570.1159800684575372No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)