FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498927969
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTTGTGGCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT14719390.295020341904304No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCGATATCGTGTAGATCTC14651360.29365681842542685Illumina Single End PCR Primer 1 (96% over 31bp)
TGGTTGTGGCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12353010.2475910505630523No Hit
TGGTTGTGGCCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5329390.10681682188877248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)