FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463013088
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCCGCTTTGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT23886800.515899023571446No Hit
TAGCCGCTTTGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15766400.34051737215687516No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG11351660.24516931149903046TruSeq Adapter, Index 6 (97% over 35bp)
TAGCCGCTTTGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5795120.12516104080409926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)