FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480140348
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG29050570.6050432987148165TruSeq Adapter, Index 6 (97% over 35bp)
ACGTTCTGTCGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15025360.3129368332111093No Hit
ACGTTCTGTCGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7249530.15098772744672564No Hit
ACGTTCTGTCGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC7143380.14877691553637146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)