FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495659984
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG138789392.8000926941885225TruSeq Adapter, Index 6 (97% over 35bp)
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT8271020.16686882675604492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)