FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488787324
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTGTGGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16938300.34653721911986407No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATCTC15204160.31105880315341405Illumina Single End PCR Primer 1 (96% over 31bp)
ATTTGTGGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13410970.27437229530117685No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC10507590.21497263705635705No Hit
ATTTGTGGTATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5127920.10491106762007602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)