FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488965869
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTGTGGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20489670.4190409044685285No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG14645400.2995178381254255TruSeq Adapter, Index 3 (97% over 35bp)
ATTTGTGGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13185400.2696589033293037No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC10544860.21565636107824124No Hit
ATTTGTGGTATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5647750.11550397191424419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)