FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488965869
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTGTGGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16717610.3418972787239676No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATCTC15193090.31071882442575965Illumina Single End PCR Primer 1 (96% over 31bp)
ATTTGTGGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13465580.2753889556246307No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC10988560.22473061407073383No Hit
ATTTGTGGTATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5197800.10630189813923394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)