FastQCFastQC Report
Mon 6 May 2024
EGAF00007885607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489140634
Total Bases73.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCATTATTTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT38471880.7865198130319306No Hit
CCCCATTATTTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA24565010.5022075103251389No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGTCCAAATCTCGTATG15821840.32346198414585203TruSeq Adapter, Index 15 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)