FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521544096
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTGTGGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21480760.4118685297129699No Hit
ATTTGTGGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA16554570.3174145796485059No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATCTC10513480.20158372188724766Illumina Single End PCR Primer 1 (96% over 31bp)
ATTTGTGGTATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6469310.12404147702210783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)