FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504202013
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTAAGAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT14791710.2933687216357861No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG11458940.22726882686999506TruSeq Adapter, Index 1 (97% over 35bp)
GGCTTAAGAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8848580.1754967209938529No Hit
GGCTTAAGAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5333440.10577982361208858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)