FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504202013
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTAAGAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT13062370.25907016757586804No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATCTC11686940.23179082388947148Illumina Single End PCR Primer 1 (96% over 31bp)
GGCTTAAGAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8867550.17587295907920145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)