FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456083474
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAAGAATCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21194500.4647065988626459No Hit
TGTAAGAATCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14537920.3187556846227671No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG10161260.222793865142327TruSeq Adapter, Index 3 (97% over 35bp)
TGTAAGAATCAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4883300.10707031230866304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)