FastQCFastQC Report
Sat 4 May 2024
EGAF00007885634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522567911
Total Bases78.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCTC22368680.42805307270388443Illumina Single End Sequencing Primer (100% over 31bp)
GTAGTCGATATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18939960.3624401652171099No Hit
GTAGTCGATATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14927300.2856528249397235No Hit
GTAGTCGATATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6507390.12452716408757829No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)