FastQCFastQC Report
Fri 3 May 2024
EGAF00007885642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490553276
Total Bases74 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCCGCTTTGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20806100.4241353797421179No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATCTC17852830.3639325405300117Illumina Single End PCR Primer 1 (96% over 33bp)
TAGCCGCTTTGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15915990.32444977495166094No Hit
TAGCCGCTTTGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6130590.12497297031607225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)