FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459829698
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAAGCTAGATCTCGTATG18274780.39742496144735745TruSeq Adapter, Index 2 (97% over 35bp)
GAGTATAGGGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT11198490.2435355969548535No Hit
GAGTATAGGGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA6500190.14136081310694293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)