FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505666838
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG69744681.3792614970729007TruSeq Adapter, Index 8 (97% over 35bp)
GGGTTTTACCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18635140.368526045206073No Hit
GGGTTTTACCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12174790.24076702455224086No Hit
GGGTTTTACCAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5599900.110742876122717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)