FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007885653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514342696
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTGCGACAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18406020.3578551837742049No Hit
CCTTGCGACAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10224500.1987876969871465No Hit
CCTTGCGACAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7553250.1468524790716577No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG5655170.10994945673341497TruSeq Adapter, Index 27 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)