FastQCFastQC Report
Fri 3 May 2024
EGAF00007885671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007885671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504037578
Total Bases76.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18330530.36367387671242246No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG12999700.2579113258099181TruSeq Adapter, Index 3 (97% over 35bp)
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10122660.20083145467380215No Hit
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6592960.13080294580734614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)