FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477079290
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC97429622.0422102162514744Illumina Single End PCR Primer 1 (96% over 33bp)
CCCGGATGTACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18765590.3933432113559153No Hit
CCCGGATGTACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14706740.3082661584408747No Hit
CCCGGATGTACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5960180.12493059591834305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)