FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502689973
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGCCCGCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17000140.3381833916150144No Hit
TAGAGCCCGCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13566350.26987508660730736No Hit
TAGAGCCCGCCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC7703820.15325191298375074No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATATGGATGTGTAGATCTC6477660.1288599404786616Illumina Single End PCR Primer 1 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)