FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501679257
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGCCCGCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16767160.33422071504941653No Hit
TAGAGCCCGCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13716300.2734077562230164No Hit
TAGAGCCCGCCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC7505140.14960036507947547No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATATGGATGTGTAGATCTC6233220.12424711432707293Illumina Single End PCR Primer 1 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)