FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466055133
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGGCCTTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18490480.396744477010191No Hit
AGCTGGCCTTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8721860.1871422366675232No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG8018730.17205539499980146TruSeq Adapter, Index 6 (97% over 35bp)
AGCTGGCCTTCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5866540.12587652371162705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)