FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466055133
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGGCCTTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15146330.3249900908182895No Hit
AGCTGGCCTTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA9878880.2119680548610115No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATCTC8757700.18791124439777385Illumina Single End PCR Primer 1 (96% over 33bp)
AGCTGGCCTTCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4835110.10374545107735139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)