FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473321316
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGGCCTTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15824410.33432700926573106No Hit
AGCTGGCCTTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10432410.22040862406458786No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATCTC9260260.19564426293448403Illumina Single End PCR Primer 1 (96% over 33bp)
AGCTGGCCTTCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5057350.10684813527392459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)