FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471842599
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTATGTTCGTGTAGATCTC29781460.6311736172850303Illumina Single End PCR Primer 1 (96% over 31bp)
ATTTGTGGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20879270.4425049803525688No Hit
ATTTGTGGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA16044580.3400409381010552No Hit
ATTTGTGGTATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6492610.1376011833980255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)