FastQCFastQC Report
Fri 10 May 2024
EGAF00007888242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424692599
Total Bases64.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG41496500.9770949646334666TruSeq Adapter, Index 3 (97% over 35bp)
GGCCGGAACATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT10634280.2503994659911651No Hit
GGCCGGAACATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA5279040.12430261352399975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)