FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506407456
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTCTGTCGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20135080.39760631012510206No Hit
ACGTTCTGTCGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13549070.26755273524250794No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG6787590.13403416398355716TruSeq Adapter, Index 6 (97% over 35bp)
ACGTTCTGTCGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5947120.117437449420176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)