FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496093797
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAAGAATCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT26021170.5245211723540256No Hit
TGTAAGAATCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA21793380.4392995867271447No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCATAGAGTGTGTAGATCTC9739230.1963183184086456Illumina Single End PCR Primer 1 (96% over 31bp)
TGTAAGAATCAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5045970.10171403130847854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)