FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497738839
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAAGAATCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT31655980.635995777697388No Hit
TGTAAGAATCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA23917490.4805228791880555No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTAAGTATCTCGTATG9877900.1984554795813312TruSeq Adapter, Index 15 (97% over 40bp)
TGTAAGAATCAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5951810.11957696554196368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)