FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484699318
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCGAGTCTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT28341000.5847130158330448No Hit
TACCGAGTCTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA19131750.39471378005941404No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG12784680.26376517410325717TruSeq Adapter, Index 3 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)