FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466474835
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGATTCGTGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16452100.3526899795141146No Hit
CCGATTCGTGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13194880.282863704748403No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATCTC6719230.14404271132868293Illumina Single End PCR Primer 1 (96% over 31bp)
CCGATTCGTGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4882320.10466416693196322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)