FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491767461
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGAGAGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21285480.43283628316351735No Hit
CTCCCGAGAGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14450160.29384132025766546No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAACCGCGATCTCGTATG13888870.28242759233718395TruSeq Adapter, Index 9 (97% over 36bp)
CTCCCGAGAGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6953670.14140158817868595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)