FastQCFastQC Report
Thu 2 May 2024
EGAF00007888281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491767461
Total Bases74.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGAGAGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17691160.3597464534157131No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGGTCAGTGTAGATCTC14563050.2961369174444016Illumina Single End Sequencing Primer (100% over 31bp)
CTCCCGAGAGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14463670.2941160435989074No Hit
CTCCCGAGAGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5575600.11337879063128985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)