FastQCFastQC Report
Fri 3 May 2024
EGAF00007888284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502309103
Total Bases75.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG21707270.4321496439215437TruSeq Adapter, Index 19 (97% over 37bp)
GAGTATAGGGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT11559480.23012682690721611No Hit
GAGTATAGGGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA6862860.1366262319160081No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)