FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007888288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007888288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471760790
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGAGAGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT22920830.48585703784326795No Hit
CTCCCGAGAGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15915070.3373546580672802No Hit
CTCCCGAGAGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC7460100.15813310809488854No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG6019320.12759263015478672TruSeq Adapter, Index 7 (97% over 34bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)