FastQCFastQC Report
Sat 4 Feb 2023
EGAF00007890744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007890744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145804783
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAATCCCA14386148998.66719461459643No Hit
CACAATCCAA11205480.7685262286628828No Hit
CACAAACCCA1602900.1099346651748729No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)