FastQCFastQC Report
Sat 11 May 2024
EGAF00007893513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007893513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34909948
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG810370.2321315402704123No Hit
TAAGACAGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAACGTCG359530.10298783601740112Illumina Single End Sequencing Primer (100% over 33bp)
GTTGACTTAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAACGTCG355070.10171026321780828Illumina Single End Sequencing Primer (100% over 33bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)