FastQCFastQC Report
Wed 15 Mar 2023
EGAF00007894692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007894692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390700427
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGAACT11402510429.18479124160261No Hit
CAGCGGAA9802596425.089802115829272No Hit
GCATTCGG8568794521.93187902505159No Hit
ATTACTTC8354888821.38438615015898No Hit
CACCGGAA8822450.22581111742680537RNA PCR Primer, Index 37 (100% over 8bp)
CAGCGAAA8702220.22273382363106556No Hit
GCATTCGA8222990.2104679040957383No Hit
ATTACTTA7249960.1855631450333685No Hit
TGCGAACA6059920.15510400248423584No Hit
CATCGGAA5861150.15001647285120576No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)