FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493545942
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGGCCTTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT10678800.21636891505431524No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG7560340.15318411836926826TruSeq Adapter, Index 7 (97% over 34bp)
AGCTGGCCTTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA4959390.10048487036288913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)