FastQCFastQC Report
Fri 3 May 2024
EGAF00007896304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490583700
Total Bases74 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGGCCTTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT10848800.22114065347054948No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG7246710.14771607780690635TruSeq Adapter, Index 7 (97% over 34bp)
AGCTGGCCTTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA5304640.10812915308845361No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)