FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483114360
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG17107950.35411801876474963TruSeq Adapter, Index 7 (97% over 34bp)
CGCACGACGTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT13728750.2841718470136139No Hit
CGCACGACGTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7579520.15688873334255682No Hit
CGCACGACGTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6010410.12440967393310355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)