FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460119164
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG18175000.39500636839373204TruSeq Adapter, Index 7 (97% over 34bp)
ATTTGTGGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT13959880.3033970565068661No Hit
ATTTGTGGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7815340.16985469442433396No Hit
ATTTGTGGTATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5773110.12546988805708603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)