FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469956501
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATCTC26799250.5702495857164449Illumina Single End PCR Primer 1 (96% over 31bp)
CCCGGATGTACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT24239330.515778161349448No Hit
CCCGGATGTACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA19992930.4254208625151033No Hit
CCCGGATGTACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5604570.11925720759419817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)