FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484275317
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCACGCAAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT26361410.544347586478375No Hit
CTCCACGCAAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA17386430.35901953681442744No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG9932330.20509676317036TruSeq Adapter, Index 19 (97% over 37bp)
CTCCACGCAAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5262940.10867661049922972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)