FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478242465
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGCGAACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18541010.3876905828511067No Hit
CATCAGCGAACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11047040.23099245275092833No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG7301020.15266356575006362TruSeq Adapter, Index 27 (97% over 38bp)
CATCAGCGAACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5524610.1155190181616348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)