FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494624167
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCACATTGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT13374270.27039257060805927No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATCTC11945040.2414972982911286Illumina Single End PCR Primer 1 (96% over 31bp)
CTGCACATTGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7903820.15979445662629743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)